{
  "_id": "6a1d6a631d7bb097a0a4f355",
  "Package": "gcpca",
  "Type": "Package",
  "Title": "Generalized Contrastive Principal Component Analysis",
  "Version": "0.0.1",
  "Authors@R": "person(\"Eliezyer\", \"de Oliveira\", email=\"eliezyer.deoliveira@gmail.com\", role = c(\"aut\", \"cre\"))",
  "Description": "Implements dense and sparse generalized contrastive\nprincipal component analysis (gcPCA) with S3 fit objects and\nmethods for prediction, summaries, and plotting. The gcPCA is a\nhyperparameter-free method for comparing high-dimensional\ndatasets collected under different experimental conditions to\nreveal low-dimensional patterns enriched in one condition\ncompared to the other. Method details are described in de\nOliveira, Garg, Hjerling-Leffler, Batista-Brito, and Sjulson\n(2025) <doi:10.1371/journal.pcbi.1012747>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "URL": "https://github.com/SjulsonLab/generalized_contrastive_PCA",
  "BugReports": "https://github.com/SjulsonLab/generalized_contrastive_PCA/issues",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-01 11:14:16 UTC",
    "User": "root"
  },
  "Author": "Eliezyer de Oliveira [aut, cre]",
  "Maintainer": "Eliezyer de Oliveira <eliezyer.deoliveira@gmail.com>",
  "Repository": "https://eliezyer.r-universe.dev",
  "Date/Publication": "2026-04-01 09:40:14 UTC",
  "RemoteUrl": "https://github.com/cran/gcpca",
  "RemoteRef": "HEAD",
  "RemoteSha": "afbefea2b55d19bd533fc70305c5a57e353234a2",
  "MD5sum": "1d0f937193cb9790920d7da9cab551cf",
  "_user": "eliezyer",
  "_type": "src",
  "_file": "gcpca_0.0.1.tar.gz",
  "_fileid": "da9b36a54e59296b80ef167146a1d6ca93e648ac87e9e43f1bb2164b68de3f6a",
  "_filesize": 108045,
  "_sha256": "da9b36a54e59296b80ef167146a1d6ca93e648ac87e9e43f1bb2164b68de3f6a",
  "_created": "2026-06-01T11:14:16.000Z",
  "_published": "2026-06-01T11:17:55.826Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78840303371,
      "time": 88,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7330017449"
    },
    {
      "job": 78840303397,
      "time": 103,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7330021985"
    },
    {
      "job": 78840303339,
      "time": 154,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7330026914"
    },
    {
      "job": 78840303344,
      "time": 184,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7330035554"
    },
    {
      "job": 78839911291,
      "time": 150,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7329990418"
    },
    {
      "job": 78840303340,
      "time": 84,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7330016082"
    },
    {
      "job": 78840303346,
      "time": 63,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7330010072"
    },
    {
      "job": 78840303453,
      "time": 65,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7330010777"
    },
    {
      "job": 78840303360,
      "time": 58,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7330008381"
    }
  ],
  "_buildurl": "https://github.com/r-universe/eliezyer/actions/runs/26751352671",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/gcpca",
  "_commit": {
    "id": "afbefea2b55d19bd533fc70305c5a57e353234a2",
    "author": "Eliezyer de Oliveira <eliezyer.deoliveira@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.0.1\n",
    "time": 1775036414
  },
  "_maintainer": {
    "name": "Eliezyer de Oliveira",
    "email": "eliezyer.deoliveira@gmail.com",
    "login": "eliezyer",
    "bluesky": "@eliezyer.bsky.social",
    "twitter": "@ezfermino",
    "description": "Neuroscientist - Rajasethupathy Lab",
    "uuid": 8554296
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-14",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.0.1",
      "date": "2026-04-01"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "eliezyer",
      "count": 1,
      "uuid": 8554296
    }
  ],
  "_userbio": {
    "uuid": 8554296,
    "type": "user",
    "name": "Eliezyer",
    "description": "Neuroscientist - Rajasethupathy Lab"
  },
  "_downloads": {
    "count": 431,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/gcpca"
  },
  "_devurl": "https://github.com/sjulsonlab/generalized_contrastive_pca",
  "_searchresults": 3,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/gcpca.html",
    "manual.pdf"
  ],
  "_realowner": "eliezyer",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2026-04-01"
    }
  ],
  "_exports": [
    "gcPCA",
    "loadings",
    "scores",
    "sparse_gcPCA"
  ],
  "_help": [
    {
      "page": "coef.gcPCA",
      "title": "Extract gcPCA loadings",
      "topics": [
        "coef.gcPCA",
        "coef.sparse_gcPCA"
      ]
    },
    {
      "page": "fitted.gcPCA",
      "title": "Return fitted training scores",
      "topics": [
        "fitted.gcPCA"
      ]
    },
    {
      "page": "gcPCA",
      "title": "Fit a generalized contrastive PCA model",
      "topics": [
        "gcPCA"
      ]
    },
    {
      "page": "loadings",
      "title": "Get gcPCA loadings",
      "topics": [
        "loadings"
      ]
    },
    {
      "page": "plot.gcPCA",
      "title": "Plot gcPCA scores",
      "topics": [
        "plot.gcPCA"
      ]
    },
    {
      "page": "predict.gcPCA",
      "title": "Project data with a fitted gcPCA model",
      "topics": [
        "predict.gcPCA",
        "predict.sparse_gcPCA"
      ]
    },
    {
      "page": "print.gcPCA",
      "title": "Print a gcPCA model",
      "topics": [
        "print.gcPCA"
      ]
    },
    {
      "page": "print.summary.gcPCA",
      "title": "Print a gcPCA summary",
      "topics": [
        "print.summary.gcPCA"
      ]
    },
    {
      "page": "scores",
      "title": "Get gcPCA scores",
      "topics": [
        "scores"
      ]
    },
    {
      "page": "sparse_gcPCA",
      "title": "Fit a sparse generalized contrastive PCA model",
      "topics": [
        "sparse_gcPCA"
      ]
    },
    {
      "page": "summary.gcPCA",
      "title": "Summarize a gcPCA model",
      "topics": [
        "summary.gcPCA"
      ]
    }
  ],
  "_rundeps": [],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "gcpca",
  "_universes": [
    "eliezyer",
    "sjulsonlab"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.1",
      "date": "2026-06-01T11:15:51.000Z",
      "distro": "noble",
      "commit": "afbefea2b55d19bd533fc70305c5a57e353234a2",
      "fileid": "b18c2b74ae6c0a6579c42c6a7b8845d5d57cf45300de120756ff9652ea253d05",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eliezyer/actions/runs/26751352671"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.1",
      "date": "2026-06-01T11:16:06.000Z",
      "distro": "noble",
      "commit": "afbefea2b55d19bd533fc70305c5a57e353234a2",
      "fileid": "015f53bc0a3a3c2b24f84b9e5e821dc8e398e3472f609498763d1d61ab99d5b2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eliezyer/actions/runs/26751352671"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.1",
      "date": "2026-06-01T11:16:24.000Z",
      "commit": "afbefea2b55d19bd533fc70305c5a57e353234a2",
      "fileid": "d0895a304e3c43321346aea4d823f95fc2ec5bd1342ee2083104c4ba23401193",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eliezyer/actions/runs/26751352671"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.1",
      "date": "2026-06-01T11:16:51.000Z",
      "commit": "afbefea2b55d19bd533fc70305c5a57e353234a2",
      "fileid": "d5f28108211364c4446a122d6503ac89fa3a07ae1ee5ceb8a010602701cb6f97",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eliezyer/actions/runs/26751352671"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.1",
      "date": "2026-06-01T11:15:56.000Z",
      "commit": "afbefea2b55d19bd533fc70305c5a57e353234a2",
      "fileid": "a4d4e351c75f44fdd23f9d61795da27b75922488e1beb57d192d2f19d2ed82ba",
      "status": "success",
      "buildurl": "https://github.com/r-universe/eliezyer/actions/runs/26751352671"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-06-01T11:15:24.000Z",
      "commit": "afbefea2b55d19bd533fc70305c5a57e353234a2",
      "fileid": "46acde86fdb0231e711a8e2729de122cca1c11b384f60a0387fc05b2fc95e671",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eliezyer/actions/runs/26751352671"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-06-01T11:15:25.000Z",
      "commit": "afbefea2b55d19bd533fc70305c5a57e353234a2",
      "fileid": "6490fe19505db7b75f86bb9fb79e134fcb81dbe77127cac8b2c124c1aeaaaf99",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eliezyer/actions/runs/26751352671"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-06-01T11:15:18.000Z",
      "commit": "afbefea2b55d19bd533fc70305c5a57e353234a2",
      "fileid": "7eb1892d82be12242fa85c58a108963b5192ec61392f107275237d07fb4e606a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/eliezyer/actions/runs/26751352671"
    }
  ]
}